Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs1898705 | chr2:119665962 | A/G | 0 | 214 | 4.07 | 19.47 | 15.33 | KM Plot |
| KIRP | rs189905203 | chr14:59985130 | A/T | 0.000205 | 213 | 16.43 | 18 | 11.2 | KM Plot |
| KIRP | rs190731301 | chr11:34946167 | T/A | 4.21E-12 | 214 | 17.08 | 12.6 | 5.57 | KM Plot |
| KIRP | rs1928345 | chr1:89568440 | G/A | 5.82E-6 | 206 | 9.77 | 19.83 | 15.65 | KM Plot |
| KIRP | rs1955560 | chr14:23721757 | A/G | 0.000665 | 214 | 16.83 | 16.27 | 14.85 | KM Plot |
| KIRP | rs1956253 | chr14:52559510 | C/T | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs1956254 | chr14:52559560 | G/T | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs1956295 | chr14:52558311 | T/C | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs1956296 | chr14:52558501 | C/A | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs1977 | chr6:26377546 | A/G | 1.89E-8 | 214 | 16.45 | 15.02 | 11.47 | KM Plot |
| KIRP | rs1978 | chr6:26377573 | A/T | 3.08E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs1978968 | chr22:18448113 | A/G | 0.000298 | 214 | 14.1 | 15.1 | 16.43 | KM Plot |
| KIRP | rs1979 | chr6:26377591 | G/T | 3.52E-7 | 213 | 16.45 | 13.38 | 9.77 | KM Plot |
| KIRP | rs1979540 | chr3:99965614 | G/A | 7.15E-6 | 213 | 16.47 | 18.47 | 4.67 | KM Plot |
| KIRP | rs199606790 | chr10:75511886 | A/AT | 0 | 205 | 15.1 | 18.03 | 2.47 | KM Plot |